STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF06958.1ABC-2 type transport system ATP-binding protein. (286 aa)    
Predicted Functional Partners:
SDF06929.1
ABC-2 type transport system permease protein.
 
 0.997
SDF06988.1
Transcriptional regulator, TetR family.
       0.807
SDF06894.1
Hypothetical protein.
       0.806
SDF06864.1
Outer membrane lipoprotein-sorting protein.
       0.797
SDF13518.1
ABC-2 type transport system permease protein.
  
 0.753
SDE49759.1
ABC-2 type transport system permease protein.
  
  0.659
SDF07020.1
Phage shock protein A (PspA) family protein.
  
    0.571
SDF07053.1
Hypothetical protein.
       0.556
SDF07085.1
Hypothetical protein.
       0.545
SDF07148.1
Glyoxylase, beta-lactamase superfamily II.
  
    0.540
Your Current Organism:
Thermus arciformis
NCBI taxonomy Id: 482827
Other names: CGMCC 1.6992, JCM 15153, T. arciformis, Thermus arciformis Zhang et al. 2010, Thermus sp. TH91, Thermus sp. TH92, strain TH92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.