A0A168KYB8 protein (Absidia glauca) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A168KYB8

PUM-HD domain-containing protein. (580 aa)

Predicted Functional Partners:

A0A168N117

0.706

A0A163JBD7

0.660

A0A168NFQ8

0.660

A0A168P5E7

0.565

A0A168RJL1

0.565

A0A168SRY1

0.565

A0A168RGH4

0.559

A0A163JK91

0.551

A0A163K664

0.550

A0A168RKK4

0.539

Your Current Organism:

Absidia glauca

NCBI taxonomy Id: 4829
Other names: A. glauca, CBS 101.08, MUCL 10044

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A163JBD7	A0A168KYB8	Uncharacterized protein.	PUM-HD domain-containing protein.	0.660
A0A163JK91	A0A168KYB8	2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial; Methyltransferase required for the conversion of 2- polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl- 6-methoxy-1,4-benzoquinol (DMQH2).	PUM-HD domain-containing protein.	0.551
A0A163K664	A0A168KYB8	Uncharacterized protein.	PUM-HD domain-containing protein.	0.550
A0A163K664	A0A168RKK4	Uncharacterized protein.	AD domain-containing protein.	0.440
A0A168KYB8	A0A163JBD7	PUM-HD domain-containing protein.	Uncharacterized protein.	0.660
A0A168KYB8	A0A163JK91	PUM-HD domain-containing protein.	2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial; Methyltransferase required for the conversion of 2- polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl- 6-methoxy-1,4-benzoquinol (DMQH2).	0.551
A0A168KYB8	A0A163K664	PUM-HD domain-containing protein.	Uncharacterized protein.	0.550
A0A168KYB8	A0A168N117	PUM-HD domain-containing protein.	Uncharacterized protein.	0.706
A0A168KYB8	A0A168NFQ8	PUM-HD domain-containing protein.	Uncharacterized protein.	0.660
A0A168KYB8	A0A168P5E7	PUM-HD domain-containing protein.	tRNA-binding domain-containing protein.	0.565
A0A168KYB8	A0A168RGH4	PUM-HD domain-containing protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.559
A0A168KYB8	A0A168RJL1	PUM-HD domain-containing protein.	Tyrosine--tRNA ligase.	0.565
A0A168KYB8	A0A168RKK4	PUM-HD domain-containing protein.	AD domain-containing protein.	0.539
A0A168KYB8	A0A168SRY1	PUM-HD domain-containing protein.	Tyrosine--tRNA ligase.	0.565
A0A168N117	A0A168KYB8	Uncharacterized protein.	PUM-HD domain-containing protein.	0.706
A0A168NFQ8	A0A168KYB8	Uncharacterized protein.	PUM-HD domain-containing protein.	0.660
A0A168P5E7	A0A168KYB8	tRNA-binding domain-containing protein.	PUM-HD domain-containing protein.	0.565
A0A168P5E7	A0A168RGH4	tRNA-binding domain-containing protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.565
A0A168P5E7	A0A168RJL1	tRNA-binding domain-containing protein.	Tyrosine--tRNA ligase.	0.994
A0A168P5E7	A0A168SRY1	tRNA-binding domain-containing protein.	Tyrosine--tRNA ligase.	0.994