A0A168PUE6 protein (Absidia glauca) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A168PUE6

Uncharacterized protein. (761 aa)

Predicted Functional Partners:

A0A168R5U6

0.843

A0A168LQJ5

0.766

A0A168PD90

0.766

A0A168KYN9

0.747

A0A168MLT3

0.747

A0A168SZW0

0.660

A0A168NAN6

0.614

A0A168RLF3

0.614

A0A168N7L4

0.610

A0A163JC99

0.609

Your Current Organism:

Absidia glauca

NCBI taxonomy Id: 4829
Other names: A. glauca, CBS 101.08, MUCL 10044

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A163JC99	A0A168N7L4	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A163JC99	A0A168PUE6	Uncharacterized protein.	Uncharacterized protein.	0.609
A0A163JC99	A0A168R5U6	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
A0A168KYN9	A0A168LQJ5	Uncharacterized protein.	Uncharacterized protein.	0.930
A0A168KYN9	A0A168MLT3	Uncharacterized protein.	Uncharacterized protein.	0.893
A0A168KYN9	A0A168PD90	Uncharacterized protein.	Uncharacterized protein.	0.930
A0A168KYN9	A0A168PUE6	Uncharacterized protein.	Uncharacterized protein.	0.747
A0A168KYN9	A0A168R5U6	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.505
A0A168KYN9	A0A168SZW0	Uncharacterized protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.608
A0A168LQJ5	A0A168KYN9	Uncharacterized protein.	Uncharacterized protein.	0.930
A0A168LQJ5	A0A168MLT3	Uncharacterized protein.	Uncharacterized protein.	0.926
A0A168LQJ5	A0A168PD90	Uncharacterized protein.	Uncharacterized protein.	0.944
A0A168LQJ5	A0A168PUE6	Uncharacterized protein.	Uncharacterized protein.	0.766
A0A168LQJ5	A0A168R5U6	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.496
A0A168LQJ5	A0A168SZW0	Uncharacterized protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.562
A0A168MLT3	A0A168KYN9	Uncharacterized protein.	Uncharacterized protein.	0.893
A0A168MLT3	A0A168LQJ5	Uncharacterized protein.	Uncharacterized protein.	0.926
A0A168MLT3	A0A168PD90	Uncharacterized protein.	Uncharacterized protein.	0.925
A0A168MLT3	A0A168PUE6	Uncharacterized protein.	Uncharacterized protein.	0.747
A0A168MLT3	A0A168R5U6	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.505