STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypdA_2Histidine kinase; KEGG: ctc:CTC01978 1.2e-24 two-component sensor histidine kinase K07704; Psort location: CytoplasmicMembrane, score: 10.00. (341 aa)    
Predicted Functional Partners:
yehT_2
LytTr DNA-binding domain protein; KEGG: rru:Rru_A0376 6.7e-16 transcriptional regulator, LytR/AlgR family K07705; Psort location: Cytoplasmic, score: 8.96.
 
 0.972
yehT_1
LytTr DNA-binding domain protein; KEGG: rru:Rru_A0376 2.2e-17 transcriptional regulator, LytR/AlgR family K07705; Psort location: Cytoplasmic, score: 9.26.
 
 0.885
lytR_1
LytTr DNA-binding domain protein; KEGG: rru:Rru_A0376 8.5e-16 transcriptional regulator, LytR/AlgR family K07705; Psort location: Cytoplasmic, score: 8.96.
 
 0.884
lytR_2
LytTr DNA-binding domain protein; KEGG: rru:Rru_A0376 2.5e-16 transcriptional regulator, LytR/AlgR family K07705; Psort location: Cytoplasmic, score: 8.96.
 
 0.884
EEC55093.1
Psort location: OuterMembrane, score: 9.92.
 
     0.758
mexA_3
Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.633
mdtC_2
RND transporter, HAE1/HME family, permease protein; KEGG: eci:UTI89_C2351 2.5e-62 yegO; hypothetical protein YegO K07789; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
     0.625
ypdA_1
Histidine kinase; KEGG: chu:CHU_2576 3.1e-57 cheA; two-component sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 
0.512
EEC54241.1
LytTr DNA-binding domain protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.480
EEC53857.1
Hypothetical protein; KEGG: bli:BL05281 1.4e-08 adaA; methylphosphotriester-DNA alkyltransferase and transcriptional regulator (AraC/XylS family) K00567.
 
 
 0.453
Your Current Organism:
Bacteroides eggerthii
NCBI taxonomy Id: 483216
Other names: B. eggerthii DSM 20697, Bacteroides eggerthii ATCC 27754, Bacteroides eggerthii DSM 20697, Bacteroides eggerthii str. DSM 20697, Bacteroides eggerthii strain DSM 20697
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