STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tvaIIAlpha amylase, catalytic domain protein; KEGG: pha:PSHAa1355 1.8e-118 glycosidase K01234; Psort location: Cytoplasmic, score: 8.96. (565 aa)    
Predicted Functional Partners:
gadC
Putative glutamate/gamma-aminobutyrate antiporter; KEGG: eci:UTI89_C0120 1.9e-09 aroP; aromatic amino acid transport protein AroP K03293; Psort location: CytoplasmicMembrane, score: 10.00.
   
 0.854
rssA_2
Phospholipase, patatin family; KEGG: tth:TTC1004 5.3e-23 serine protease.
       0.790
glgB
Alpha amylase, catalytic domain protein; KEGG: bfr:BF2243 0. 1,4-alpha-glucan branching enzyme K00700.
 
 
 0.692
EEC53053.1
KEGG: csa:Csal_2097 7.3e-10 xanthine-guanine phosphoribosyltransferase K00769; Psort location: Cytoplasmic, score: 8.96.
       0.602
pulA
Pullulanase, type I; KEGG: bth:BT4689 1.7e-198 pullulanase precursor K01200; Psort location: Cytoplasmic, score: 9.26; Belongs to the glycosyl hydrolase 13 family.
 
 
0.587
glgP
KEGG: bth:BT1293 0. alpha-glucan phosphorylase K00688; Psort location: Cytoplasmic, score: 8.96.
 
 0.580
glgA1
Starch synthase catalytic domain protein; KEGG: chu:CHU_3836 1.0e-58 glgA; glycogen synthase-related protein K00703; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.574
malQ
KEGG: bfs:BF3620 0. putative alpha-glucanotransferase K00705; Psort location: Cytoplasmic, score: 9.26.
 
 
 0.569
EEC53054.1
4Fe-4S binding domain protein; KEGG: mka:MK0323 2.7e-06 fwd_F2; probable formylmethanofuran dehydrogenase subunit F, ferredoxin containing K00199; Psort location: Cytoplasmic, score: 8.96.
       0.527
kojP_1
Glycosyl hydrolase family 65 central catalytic domain protein; KEGG: bfr:BF3310 6.5e-302 trehalose/maltose hydrolase K00691.
 
 
 0.506
Your Current Organism:
Bacteroides eggerthii
NCBI taxonomy Id: 483216
Other names: B. eggerthii DSM 20697, Bacteroides eggerthii ATCC 27754, Bacteroides eggerthii DSM 20697, Bacteroides eggerthii str. DSM 20697, Bacteroides eggerthii strain DSM 20697
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