STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduI_14-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (280 aa)    
Predicted Functional Partners:
gno
Oxidoreductase, short chain dehydrogenase/reductase family protein; KEGG: bth:BT3232 7.2e-138 gluconate 5-dehydrogenase K00046; Psort location: Cytoplasmic, score: 9.26.
 
 
 0.913
yteR_4
Glycosyl hydrolase, family 88.
 
   
 0.723
lepB_1
KEGG: bfr:BF0180 3.9e-114 signal peptidase I K03100; Belongs to the peptidase S26 family.
   
    0.689
yteR_3
Glycosyl hydrolase, family 88.
 
   
 0.683
EEC52290.1
Hypothetical protein.
 
  
 0.666
EEC54953.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; KEGG: bcl:ABC0632 8.8e-53 mannonate oxidoreductase; Psort location: Cytoplasmic, score: 9.26.
  
 
 0.579
EEC52402.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; KEGG: bcl:ABC0632 6.9e-53 mannonate oxidoreductase; Psort location: Cytoplasmic, score: 9.26.
  
 
 0.579
yteR_2
Glycosyl hydrolase, family 88.
 
   
 0.489
yesR
Glycosyl hydrolase, family 88.
 
   
 0.461
ugl_3
Glycosyl hydrolase, family 88; KEGG: ret:RHE_PF00318 6.8e-46 putative glucoronyl hydrolase protein K01238.
 
   
 0.444
Your Current Organism:
Bacteroides eggerthii
NCBI taxonomy Id: 483216
Other names: B. eggerthii DSM 20697, Bacteroides eggerthii ATCC 27754, Bacteroides eggerthii DSM 20697, Bacteroides eggerthii str. DSM 20697, Bacteroides eggerthii strain DSM 20697
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