STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sigM_3Sigma-70 region 2; KEGG: reh:H16_A2563 3.9e-11 rpoE1; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; Belongs to the sigma-70 factor family. ECF subfamily. (167 aa)    
Predicted Functional Partners:
rpoE_5
Sigma-70 region 2; KEGG: reh:H16_A2563 7.2e-19 rpoE1; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.760
rpoE_2
Sigma-70 region 2; KEGG: reh:H16_A2563 1.8e-13 rpoE1; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.731
rpoE_1
Sigma-70 region 2; KEGG: shn:Shewana3_0763 3.6e-17 RNA polymerase, sigma-24 subunit, ECF subfamily K00058; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.727
rpoE_4
Sigma-70 region 2; KEGG: reh:H16_A2563 4.1e-16 rpoE1; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.715
sigM_1
Sigma-70 region 2; KEGG: shn:Shewana3_0763 8.5e-16 RNA polymerase, sigma-24 subunit, ECF subfamily K00058; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.690
sigX
KEGG: chu:CHU_3562 5.8e-17 rpoE; RNA polymerase sigma-70 factor, ECF subfamily K00960.
  
     0.651
sigV
Sigma-70 region 2; KEGG: shn:Shewana3_0763 3.0e-13 RNA polymerase, sigma-24 subunit, ECF subfamily K00058; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.612
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.593
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.581
EEC53617.1
Hypothetical protein.
    
 
 0.530
Your Current Organism:
Bacteroides eggerthii
NCBI taxonomy Id: 483216
Other names: B. eggerthii DSM 20697, Bacteroides eggerthii ATCC 27754, Bacteroides eggerthii DSM 20697, Bacteroides eggerthii str. DSM 20697, Bacteroides eggerthii strain DSM 20697
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.