STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC58738.1Transcriptional regulator, AraC family; KEGG: bcz:BCZK2914 5.4e-12 adaA; methylphosphotriester-DNA alkyltransferase K00567; Psort location: Cytoplasmic, score: 9.97. (289 aa)    
Predicted Functional Partners:
EEC57504.1
Transcriptional regulator, AraC family; KEGG: bli:BL05281 3.2e-13 adaA; methylphosphotriester-DNA alkyltransferase and transcriptional regulator (AraC/XylS family) K00567; Psort location: Cytoplasmic, score: 9.97.
 
0.927
nifJ
Pyruvate synthase; KEGG: tte:TTE0445 0. porA; Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit K03737.
  
 0.895
EEC57640.1
KEGG: mmr:Mmar10_1341 1.8e-52 prephenate dehydratase K01713; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.888
EEC56718.1
Putative flagellar basal-body rod protein FlgG.
    
   0.845
flgF
Flagellar basal-body rod protein FlgF.
    
   0.845
EEC58764.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
    
 
 0.811
EEC57872.1
Hypothetical protein; KEGG: reh:H16_A2373 0.00020 rpoS; DNA-directed RNA polymerase sigma subunit (sigma38) K00960; Psort location: Cytoplasmic, score: 8.96.
    
 
 0.811
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.811
EEC58550.1
Putative phosphate acetyltransferase; KEGG: tte:TTE1482 3.4e-67 pta; phosphotransacetylase K00625.
     
 0.801
EEC56109.1
KEGG: btk:BT9727_3183 1.7e-05 transcriptional regulator, GntR family.
 
  
 0.789
Your Current Organism:
Bacteroides pectinophilus
NCBI taxonomy Id: 483218
Other names: Bacteroides pectinophilus ATCC 43243, [. pectinophilus ATCC 43243, [Bacteroides] pectinophilus ATCC 43243, [Bacteroides] pectinophilus str. ATCC 43243, [Bacteroides] pectinophilus strain ATCC 43243
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.