STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rumA23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: tte:TTE1797 4.1e-119 trmA; SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase K00599; Psort location: Cytoplasmic, score: 8.96; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (547 aa)    
Predicted Functional Partners:
EEC58757.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46.
       0.783
EEC58759.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.701
EEC58756.1
Hypothetical protein.
       0.647
EEC58898.1
NOL1/NOP2/sun family protein; KEGG: lsl:LSL_0999 2.3e-70 putative 23S rRNA m(5)C methyltransferase K00599.
 
  
 0.594
EEC58755.1
KEGG: bha:BH0648 7.0e-179 pcrA; ATP-dependent DNA helicase K03657; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.530
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
 
   
 0.479
pheT
KEGG: cno:NT01CX_1768 9.3e-200 pheT; phenylalanyl-tRNA synthetase, beta subunit K01888; Psort location: Cytoplasmic, score: 9.97.
 
    0.465
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.461
EEC57763.1
NusB family protein; KEGG: sth:STH1349 2.3e-38 Sun protein K03500; Psort location: Cytoplasmic, score: 8.96; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
  
 0.452
nifJ
Pyruvate synthase; KEGG: tte:TTE0445 0. porA; Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit K03737.
  
    0.423
Your Current Organism:
Bacteroides pectinophilus
NCBI taxonomy Id: 483218
Other names: Bacteroides pectinophilus ATCC 43243, [. pectinophilus ATCC 43243, [Bacteroides] pectinophilus ATCC 43243, [Bacteroides] pectinophilus str. ATCC 43243, [Bacteroides] pectinophilus strain ATCC 43243
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.