STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
dinBImpB/MucB/SamB family protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (413 aa)    
Predicted Functional Partners:
nifJ
Pyruvate synthase; KEGG: tte:TTE0445 0. porA; Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit K03737.
   
   0.820
EEC58048.1
Haloacid dehalogenase-like hydrolase; KEGG: btk:BT9727_2625 2.3e-15 pfs; MTA/SAH nucleosidase, C-terminal region (5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase, C-terminal region) K01243; Psort location: Cytoplasmic, score: 8.96.
   
   0.800
EEC58047.1
KEGG: cno:NT01CX_1801 1.2e-14 noxC; nitroreductase family protein; Psort location: Cytoplasmic, score: 8.96.
       0.773
EEC55728.1
Putative DNA polymerase IV; KEGG: swo:Swol_1670 2.4e-17 DNA-directed DNA polymerase K00961.
  
     0.772
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.718
dnaN
KEGG: cno:NT01CX_0866 2.6e-53 dnaN; DNA polymerase III, beta subunit K00961; Psort location: Cytoplasmic, score: 8.96.
   
 0.704
EEC55774.1
KEGG: dsy:DSY0002 1.2e-09 dnaN; DNA polymerase III beta chain K00961; Psort location: Cytoplasmic, score: 8.96.
   
 0.704
valS
valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
  
    0.636
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.578
EEC58145.1
8-oxoguanine DNA-glycosylase (ogg); KEGG: ctc:CTC02418 1.7e-56 8-oxoguanine DNA glycosylase K03660; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.554
Your Current Organism:
Bacteroides pectinophilus
NCBI taxonomy Id: 483218
Other names: Bacteroides pectinophilus ATCC 43243, [. pectinophilus ATCC 43243, [Bacteroides] pectinophilus ATCC 43243, [Bacteroides] pectinophilus str. ATCC 43243, [Bacteroides] pectinophilus strain ATCC 43243
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