Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEC56847.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (102 aa)    
Predicted Functional Partners:
EEC56846.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.822
EEC56848.1
Hypothetical protein.
       0.714
EEC56849.1
Resolvase, N-terminal domain protein.
       0.648
EEC56844.1
Hypothetical protein.
       0.599
EEC56850.1
KEGG: psp:PSPPH_2917 0.00050 DNA-binding protein K00517; Psort location: Cytoplasmic, score: 8.96.
       0.415
Your Current Organism:
Bacteroides pectinophilus
NCBI taxonomy Id: 483218
Other names: Bacteroides pectinophilus ATCC 43243, [. pectinophilus ATCC 43243, [Bacteroides] pectinophilus ATCC 43243, [Bacteroides] pectinophilus str. ATCC 43243, [Bacteroides] pectinophilus strain ATCC 43243
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