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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC57518.1Hypothetical protein; Belongs to the 'phage' integrase family. (254 aa)    
Predicted Functional Partners:
EEC57517.1
Site-specific recombinase, phage integrase family; Psort location: Cytoplasmic, score: 8.96.
     0.896
EEC55713.1
Site-specific recombinase, phage integrase family; Psort location: Cytoplasmic, score: 8.96.
 
     0.805
nifJ
Pyruvate synthase; KEGG: tte:TTE0445 0. porA; Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit K03737.
    
  0.803
EEC56232.1
Site-specific recombinase, phage integrase family; Psort location: Cytoplasmic, score: 8.96.
 
     0.801
EEC57252.1
Hypothetical protein.
 
     0.786
EEC57895.1
DNA-binding helix-turn-helix protein.
 
    0.778
EEC57251.1
Hypothetical protein.
  
     0.774
EEC57254.1
DNA-binding helix-turn-helix protein.
  
    0.771
EEC56234.1
DNA-binding helix-turn-helix protein.
  
    0.770
EEC58849.1
DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 8.96.
  
    0.769
Your Current Organism:
Bacteroides pectinophilus
NCBI taxonomy Id: 483218
Other names: Bacteroides pectinophilus ATCC 43243, [. pectinophilus ATCC 43243, [Bacteroides] pectinophilus ATCC 43243, [Bacteroides] pectinophilus str. ATCC 43243, [Bacteroides] pectinophilus strain ATCC 43243
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