STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC57589.1Hypothetical protein; KEGG: fal:FRAAL2459 7.7e-38 oxido-reductase. (262 aa)    
Predicted Functional Partners:
EEC57588.1
Hypothetical protein; KEGG: fal:FRAAL2459 1.9e-18 oxido-reductase.
     0.993
EEC57587.1
Hypothetical protein; KEGG: fal:FRAAL2459 1.9e-09 oxido-reductase; Psort location: Cytoplasmic, score: 8.96.
     0.962
EEC56715.1
comF family protein; KEGG: chu:CHU_3495 2.5e-16 purF; amidophosphoribosyltransferase K00764; Psort location: Cytoplasmic, score: 8.96.
  
    0.571
EEC57590.1
Dolichyl-phosphate-mannose-protein mannosyltransferase; KEGG: ava:Ava_3845 5.7e-25 glycosyl transferase, family 39 K00728; Psort location: CytoplasmicMembrane, score: 10.00.
       0.467
EEC56757.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.451
EEC57471.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46.
     
 0.434
EEC57776.1
Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
    
 0.424
hemZ
KEGG: cpe:CPE1935 7.0e-92 hemZ; probable coproporphyrinogen III oxidase K02495; Psort location: Cytoplasmic, score: 9.97.
    
 0.424
EEC57591.1
Putative equine arteritis virus small envelope glycoprotein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.422
EEC56586.1
Hypothetical protein.
     
 0.416
Your Current Organism:
Bacteroides pectinophilus
NCBI taxonomy Id: 483218
Other names: Bacteroides pectinophilus ATCC 43243, [. pectinophilus ATCC 43243, [Bacteroides] pectinophilus ATCC 43243, [Bacteroides] pectinophilus str. ATCC 43243, [Bacteroides] pectinophilus strain ATCC 43243
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.