STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001660385_00264Unannotated protein. (488 aa)    
Predicted Functional Partners:
NI17_16030
Unannotated protein.
 0.999
NI17_05625
Unannotated protein.
 
 
 0.989
NI17_16230
Unannotated protein; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
  
 
 0.976
glgE
Unannotated protein; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
 
   
 0.974
NI17_16045
Unannotated protein.
  
 0.964
GCA_001660385_02999
Unannotated protein.
 
 
 0.964
GCA_001660385_02489
Unannotated protein.
 
 
 0.958
NI17_08580
Unannotated protein; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.948
glgB
Unannotated protein; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
 0.945
NI17_05630
Unannotated protein; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.942
Your Current Organism:
Thermobifida halotolerans
NCBI taxonomy Id: 483545
Other names: DSM 44931, JCM 16012, KCTC 19123, T. halotolerans, Thermobifida halotolerans Yang et al. 2008, YIM 90462
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.