Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NI17_11075 | NI17_11080 | GCA_001660385_00288 | GCA_001660385_00289 | Unannotated protein. | Unannotated protein. | 0.999 |
NI17_11075 | NI17_11095 | GCA_001660385_00288 | GCA_001660385_00292 | Unannotated protein. | Unannotated protein. | 0.962 |
NI17_11075 | NI17_11105 | GCA_001660385_00288 | GCA_001660385_00294 | Unannotated protein. | Unannotated protein; Belongs to the alpha-IPM synthase/homocitrate synthase family. | 0.909 |
NI17_11075 | NI17_12075 | GCA_001660385_00288 | GCA_001660385_03753 | Unannotated protein. | Unannotated protein. | 0.539 |
NI17_11075 | NI17_14250 | GCA_001660385_00288 | GCA_001660385_02469 | Unannotated protein. | Unannotated protein; Belongs to the isocitrate and isopropylmalate dehydrogenases family. | 0.453 |
NI17_11075 | ilvC | GCA_001660385_00288 | GCA_001660385_00290 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.997 |
NI17_11075 | ilvD | GCA_001660385_00288 | GCA_001660385_02994 | Unannotated protein. | Unannotated protein; Belongs to the IlvD/Edd family. | 0.932 |
NI17_11075 | leuA | GCA_001660385_00288 | GCA_001660385_00579 | Unannotated protein. | Unannotated protein; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily. | 0.916 |
NI17_11075 | leuC | GCA_001660385_00288 | GCA_001660385_00309 | Unannotated protein. | Unannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. | 0.779 |
NI17_11075 | leuD | GCA_001660385_00288 | GCA_001660385_00310 | Unannotated protein. | Unannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. | 0.791 |
NI17_11080 | NI17_11075 | GCA_001660385_00289 | GCA_001660385_00288 | Unannotated protein. | Unannotated protein. | 0.999 |
NI17_11080 | NI17_11095 | GCA_001660385_00289 | GCA_001660385_00292 | Unannotated protein. | Unannotated protein. | 0.993 |
NI17_11080 | NI17_11105 | GCA_001660385_00289 | GCA_001660385_00294 | Unannotated protein. | Unannotated protein; Belongs to the alpha-IPM synthase/homocitrate synthase family. | 0.960 |
NI17_11080 | NI17_12075 | GCA_001660385_00289 | GCA_001660385_03753 | Unannotated protein. | Unannotated protein. | 0.893 |
NI17_11080 | ilvC | GCA_001660385_00289 | GCA_001660385_00290 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.999 |
NI17_11080 | ilvD | GCA_001660385_00289 | GCA_001660385_02994 | Unannotated protein. | Unannotated protein; Belongs to the IlvD/Edd family. | 0.969 |
NI17_11080 | leuA | GCA_001660385_00289 | GCA_001660385_00579 | Unannotated protein. | Unannotated protein; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily. | 0.979 |
NI17_11080 | leuC | GCA_001660385_00289 | GCA_001660385_00309 | Unannotated protein. | Unannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. | 0.898 |
NI17_11080 | leuD | GCA_001660385_00289 | GCA_001660385_00310 | Unannotated protein. | Unannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. | 0.945 |
NI17_11095 | NI17_11075 | GCA_001660385_00292 | GCA_001660385_00288 | Unannotated protein. | Unannotated protein. | 0.962 |
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