STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NI17_14070Unannotated protein. (64 aa)    
Predicted Functional Partners:
NI17_14075
Unannotated protein.
       0.620
recX
Unannotated protein; Modulates RecA activity; Belongs to the RecX family.
       0.620
rbpA-2
Unannotated protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.558
NI17_14065
Unannotated protein.
       0.555
nucS
Unannotated protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
  
   
 0.542
NI17_06370
Unannotated protein.
  
     0.478
rny
Unannotated protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
       0.463
rpsT
Unannotated protein; Binds directly to 16S ribosomal RNA.
      
 0.450
NI17_06135
Unannotated protein.
      
 0.450
Your Current Organism:
Thermobifida halotolerans
NCBI taxonomy Id: 483545
Other names: DSM 44931, JCM 16012, KCTC 19123, T. halotolerans, Thermobifida halotolerans Yang et al. 2008, YIM 90462
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.