STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpqBUnannotated protein. (625 aa)    
Predicted Functional Partners:
NI17_12895
Unannotated protein.
 
     0.882
NI17_12900
Unannotated protein.
     
 0.765
NI17_22940
Unannotated protein.
  
     0.745
NI17_11650
Unannotated protein.
  
     0.732
NI17_16980
Unannotated protein.
       0.730
NI17_06730
Unannotated protein.
  
     0.726
NI17_10325
Unannotated protein.
  
     0.721
NI17_16215
Unannotated protein.
  
     0.709
NI17_12060
Unannotated protein.
  
     0.706
NI17_14280
Unannotated protein.
  
     0.703
Your Current Organism:
Thermobifida halotolerans
NCBI taxonomy Id: 483545
Other names: DSM 44931, JCM 16012, KCTC 19123, T. halotolerans, Thermobifida halotolerans Yang et al. 2008, YIM 90462
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.