STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpfUnannotated protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (228 aa)    
Predicted Functional Partners:
rpsF
Unannotated protein; Binds together with S18 to 16S ribosomal RNA.
  
 
   0.999
NI17_22705
Unannotated protein; Belongs to the universal ribosomal protein uS3 family.
    
   0.997
rpsI
Unannotated protein; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.997
rplO
Unannotated protein; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
 
 0.986
rpmA
Unannotated protein; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.986
rpsP
Unannotated protein; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 
 0.985
rpmC
Unannotated protein; Belongs to the universal ribosomal protein uL29 family.
  
 
 
 0.985
rplI
Unannotated protein; Binds to the 23S rRNA.
 
   0.985
rpsE
Unannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 
 0.983
GCA_001660385_02653
Unannotated protein.
   
 
 0.983
Your Current Organism:
Thermobifida halotolerans
NCBI taxonomy Id: 483545
Other names: DSM 44931, JCM 16012, KCTC 19123, T. halotolerans, Thermobifida halotolerans Yang et al. 2008, YIM 90462
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.