STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NI17_11390Unannotated protein. (831 aa)    
Predicted Functional Partners:
NI17_05480
Unannotated protein.
 
 
 0.872
NI17_10520
Unannotated protein; Belongs to the carbohydrate kinase PfkB family.
   
    0.798
NI17_07550
Unannotated protein.
 
  
  0.768
NI17_11315
Unannotated protein.
  
  
 0.739
GCA_001660385_03473
Unannotated protein.
 
 0.731
NI17_20835
Unannotated protein.
 
 
 0.721
GCA_001660385_03244
Unannotated protein.
  
 
 0.673
NI17_05465
Unannotated protein; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.652
NI17_04675
Unannotated protein; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
 
 0.636
NI17_03500
Unannotated protein.
  
 
 0.621
Your Current Organism:
Thermobifida halotolerans
NCBI taxonomy Id: 483545
Other names: DSM 44931, JCM 16012, KCTC 19123, T. halotolerans, Thermobifida halotolerans Yang et al. 2008, YIM 90462
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.