STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001660385_03466Unannotated protein. (189 aa)    
Predicted Functional Partners:
NI17_02590
Unannotated protein.
 
     0.899
NI17_02600
Unannotated protein.
 
  
  0.853
NI17_02610
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
 
     0.783
NI17_21920
Unannotated protein.
  
  
  0.771
NI17_21935
Unannotated protein.
 
     0.739
NI17_21925
Unannotated protein.
 
  
  0.670
NI17_02530
Unannotated protein.
 
  
  0.636
NI17_06215
Unannotated protein.
  
  
  0.628
GCA_001660385_03467
Unannotated protein.
       0.515
GCA_001660385_04483
Unannotated protein.
  
     0.481
Your Current Organism:
Thermobifida halotolerans
NCBI taxonomy Id: 483545
Other names: DSM 44931, JCM 16012, KCTC 19123, T. halotolerans, Thermobifida halotolerans Yang et al. 2008, YIM 90462
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.