STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NI17_01070Unannotated protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (359 aa)    
Predicted Functional Partners:
NI17_01075
Unannotated protein; Belongs to the DapA family.
 
  
  0.915
NI17_01085
Unannotated protein.
 
  
  0.725
NI17_08470
Unannotated protein.
  
  
 
0.711
NI17_02455
Unannotated protein.
  
  
 
0.708
NI17_02390
Unannotated protein.
  
  
 
0.689
NI17_01080
Unannotated protein.
 
     0.668
NI17_01090
Unannotated protein.
 
     0.662
NI17_04040
Unannotated protein.
 
     0.453
dapA
Unannotated protein; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
    
  0.444
NI17_14220
Unannotated protein; Belongs to the DapA family.
    
  0.444
Your Current Organism:
Thermobifida halotolerans
NCBI taxonomy Id: 483545
Other names: DSM 44931, JCM 16012, KCTC 19123, T. halotolerans, Thermobifida halotolerans Yang et al. 2008, YIM 90462
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.