Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001660385_01560 | NI17_07450 | GCA_001660385_01560 | GCA_001660385_03967 | Unannotated protein. | Unannotated protein. | 0.931 |
GCA_001660385_01560 | NI17_17365 | GCA_001660385_01560 | GCA_001660385_04165 | Unannotated protein. | Unannotated protein. | 0.936 |
GCA_001660385_01560 | NI17_22650 | GCA_001660385_01560 | GCA_001660385_02633 | Unannotated protein. | Unannotated protein. | 0.931 |
GCA_001660385_01560 | mutM | GCA_001660385_01560 | GCA_001660385_00335 | Unannotated protein. | Unannotated protein; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.460 |
GCA_001660385_01560 | nth | GCA_001660385_01560 | GCA_001660385_04005 | Unannotated protein. | Unannotated protein; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.879 |
GCA_001660385_01560 | polA | GCA_001660385_01560 | GCA_001660385_03735 | Unannotated protein. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.548 |
GCA_001660385_01560 | ung | GCA_001660385_01560 | GCA_001660385_03551 | Unannotated protein. | Unannotated protein; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.638 |
NI17_07450 | GCA_001660385_01560 | GCA_001660385_03967 | GCA_001660385_01560 | Unannotated protein. | Unannotated protein. | 0.931 |
NI17_07450 | NI17_16555 | GCA_001660385_03967 | GCA_001660385_04707 | Unannotated protein. | Unannotated protein. | 0.909 |
NI17_07450 | NI17_17365 | GCA_001660385_03967 | GCA_001660385_04165 | Unannotated protein. | Unannotated protein. | 0.916 |
NI17_07450 | nth | GCA_001660385_03967 | GCA_001660385_04005 | Unannotated protein. | Unannotated protein; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.982 |
NI17_07450 | polA | GCA_001660385_03967 | GCA_001660385_03735 | Unannotated protein. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.919 |
NI17_07450 | ung | GCA_001660385_03967 | GCA_001660385_03551 | Unannotated protein. | Unannotated protein; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.849 |
NI17_16555 | NI17_07450 | GCA_001660385_04707 | GCA_001660385_03967 | Unannotated protein. | Unannotated protein. | 0.909 |
NI17_16555 | NI17_17365 | GCA_001660385_04707 | GCA_001660385_04165 | Unannotated protein. | Unannotated protein. | 0.909 |
NI17_16555 | NI17_22650 | GCA_001660385_04707 | GCA_001660385_02633 | Unannotated protein. | Unannotated protein. | 0.909 |
NI17_16555 | mutM | GCA_001660385_04707 | GCA_001660385_00335 | Unannotated protein. | Unannotated protein; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.788 |
NI17_16555 | nth | GCA_001660385_04707 | GCA_001660385_04005 | Unannotated protein. | Unannotated protein; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.724 |
NI17_16555 | polA | GCA_001660385_04707 | GCA_001660385_03735 | Unannotated protein. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.495 |
NI17_16555 | ung | GCA_001660385_04707 | GCA_001660385_03551 | Unannotated protein. | Unannotated protein; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.547 |
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