Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NI17_08505 | NI17_16290 | GCA_001660385_04573 | GCA_001660385_04135 | Unannotated protein. | Unannotated protein. | 0.488 |
NI17_09240 | NI17_16290 | GCA_001660385_00563 | GCA_001660385_04135 | Unannotated protein. | Unannotated protein. | 0.490 |
NI17_09240 | NI17_17035 | GCA_001660385_00563 | GCA_001660385_04028 | Unannotated protein. | Unannotated protein. | 0.452 |
NI17_14570 | NI17_16290 | GCA_001660385_03918 | GCA_001660385_04135 | Unannotated protein. | Unannotated protein. | 0.735 |
NI17_14570 | rpoA | GCA_001660385_03918 | GCA_001660385_02235 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.429 |
NI17_14570 | rpoB | GCA_001660385_03918 | GCA_001660385_02197 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.454 |
NI17_14570 | rpoZ | GCA_001660385_03918 | GCA_001660385_03882 | Unannotated protein. | Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.422 |
NI17_16275 | NI17_16290 | GCA_001660385_04132 | GCA_001660385_04135 | Unannotated protein. | Unannotated protein. | 0.838 |
NI17_16275 | rpoA | GCA_001660385_04132 | GCA_001660385_02235 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.950 |
NI17_16275 | rpoB | GCA_001660385_04132 | GCA_001660385_02197 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.947 |
NI17_16275 | rpoZ | GCA_001660385_04132 | GCA_001660385_03882 | Unannotated protein. | Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.949 |
NI17_16285 | NI17_16290 | GCA_001660385_04134 | GCA_001660385_04135 | Unannotated protein. | Unannotated protein. | 0.530 |
NI17_16290 | NI17_08505 | GCA_001660385_04135 | GCA_001660385_04573 | Unannotated protein. | Unannotated protein. | 0.488 |
NI17_16290 | NI17_09240 | GCA_001660385_04135 | GCA_001660385_00563 | Unannotated protein. | Unannotated protein. | 0.490 |
NI17_16290 | NI17_14570 | GCA_001660385_04135 | GCA_001660385_03918 | Unannotated protein. | Unannotated protein. | 0.735 |
NI17_16290 | NI17_16275 | GCA_001660385_04135 | GCA_001660385_04132 | Unannotated protein. | Unannotated protein. | 0.838 |
NI17_16290 | NI17_16285 | GCA_001660385_04135 | GCA_001660385_04134 | Unannotated protein. | Unannotated protein. | 0.530 |
NI17_16290 | NI17_17035 | GCA_001660385_04135 | GCA_001660385_04028 | Unannotated protein. | Unannotated protein. | 0.601 |
NI17_16290 | rbpA-2 | GCA_001660385_04135 | GCA_001660385_04608 | Unannotated protein. | Unannotated protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. | 0.703 |
NI17_16290 | rpoA | GCA_001660385_04135 | GCA_001660385_02235 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.607 |
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