STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NI17_17920Unannotated protein; Belongs to the HpcH/HpaI aldolase family. (318 aa)    
Predicted Functional Partners:
NI17_12730
Unannotated protein.
    
 0.793
NI17_00505
Unannotated protein; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.789
NI17_07205
Unannotated protein; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.788
NI17_04230
Unannotated protein.
   
    0.754
NI17_03680
Unannotated protein.
  
 
 0.743
NI17_14160
Unannotated protein; Belongs to the malate synthase family.
    
 0.712
GCA_001660385_01021
Unannotated protein.
    
 0.704
NI17_14415
Unannotated protein.
    
 0.704
NI17_06325
Unannotated protein.
     
 0.704
acsA
Unannotated protein; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
   
  0.691
Your Current Organism:
Thermobifida halotolerans
NCBI taxonomy Id: 483545
Other names: DSM 44931, JCM 16012, KCTC 19123, T. halotolerans, Thermobifida halotolerans Yang et al. 2008, YIM 90462
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.