STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NI17_18325Unannotated protein; Belongs to the GcvT family. (343 aa)    
Predicted Functional Partners:
NI17_13470
Unannotated protein; Belongs to the HesB/IscA family.
 
 
 0.778
NI17_18330
Unannotated protein; May play a role in the intracellular transport of hydrophobic ligands.
 
    0.748
NI17_11990
Unannotated protein.
  
     0.618
NI17_13365
Unannotated protein.
     
 0.576
NI17_04980
Unannotated protein.
  
     0.541
NI17_04725
Unannotated protein.
  
     0.435
GCA_001660385_01876
Unannotated protein.
 
     0.416
NI17_08335
Unannotated protein.
     
 0.404
NI17_17820
Unannotated protein.
 
     0.403
Your Current Organism:
Thermobifida halotolerans
NCBI taxonomy Id: 483545
Other names: DSM 44931, JCM 16012, KCTC 19123, T. halotolerans, Thermobifida halotolerans Yang et al. 2008, YIM 90462
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.