Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AJF07862.14Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (766 aa)    
Predicted Functional Partners:
AJF07368.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
AJF05577.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamate synthase family.
 
 
 0.998
AJF05578.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
AJF05530.1
NADH-ubiquinone oxidoreductase subunit 3; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.987
AJF05396.1
NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.971
AJF05395.1
NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.951
AJF06738.1
Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.949
AJF07369.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.938
AJF07483.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.887
AJF06190.1
FeS-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.867
Your Current Organism:
Geoalkalibacter subterraneus
NCBI taxonomy Id: 483547
Other names: DSM 23483, G. subterraneus, Geoalkalibacter subterraneus Greene et al. 2009, JCM 15104, KCTC 5626, strain Red1
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