Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AJF05703.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (112 aa)    
Predicted Functional Partners:
AJF05702.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.974
AJF05701.1
Cobalamin biosynthesis protein CbiM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.947
AJF05700.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.941
cbiN
Cobalamin biosynthesis protein CbiN; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family.
     
  0.900
AJF05704.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.895
AJF07874.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.788
AJF06755.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.688
AJF07845.1
Hydroxylamine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.462
AJF06156.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.452
AJF05708.1
Nickel-responsive regulator; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
 
     0.424
Your Current Organism:
Geoalkalibacter subterraneus
NCBI taxonomy Id: 483547
Other names: DSM 23483, G. subterraneus, Geoalkalibacter subterraneus Greene et al. 2009, JCM 15104, KCTC 5626, strain Red1
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