Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AJF07885.1Type II secretion system protein E; Derived by automated computational analysis using gene prediction method: Protein Homology. (743 aa)    
Predicted Functional Partners:
AJF06045.1
Pilus assembly protein PilC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.939
AJF06204.1
Type II secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.908
AJF06375.1
General secretion pathway protein GspF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.908
AJF07918.1
Peptidase A24; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.817
AJF06370.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.775
AJF06374.1
General secretion pathway protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.675
AJF06011.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.591
AJF06209.1
General secretion pathway protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.543
AJF06372.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.485
AJF06874.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.483
Your Current Organism:
Geoalkalibacter subterraneus
NCBI taxonomy Id: 483547
Other names: DSM 23483, G. subterraneus, Geoalkalibacter subterraneus Greene et al. 2009, JCM 15104, KCTC 5626, strain Red1
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