Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AJF05948.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (592 aa)    
Predicted Functional Partners:
AJF07629.1
ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.929
AJF07631.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.929
AJF05947.1
DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.910
AJF05943.1
Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.902
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
     
  0.900
AJF05949.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.896
AJF05942.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.885
AJF05944.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.885
AJF05946.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.800
AJF05945.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
Your Current Organism:
Geoalkalibacter subterraneus
NCBI taxonomy Id: 483547
Other names: DSM 23483, G. subterraneus, Geoalkalibacter subterraneus Greene et al. 2009, JCM 15104, KCTC 5626, strain Red1
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