STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJF06288.1Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (496 aa)    
Predicted Functional Partners:
AJF06287.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.945
AJF06300.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.767
AJF06781.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.767
AJF07321.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.767
AJF07798.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.767
AJF06286.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.762
AJF07937.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.404
Your Current Organism:
Geoalkalibacter subterraneus
NCBI taxonomy Id: 483547
Other names: DSM 23483, G. subterraneus, Geoalkalibacter subterraneus Greene et al. 2009, JCM 15104, KCTC 5626, strain Red1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.