STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJF06798.1Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1182 aa)    
Predicted Functional Partners:
AJF06797.1
VrlD; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.790
AJF06799.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.776
AJF06800.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.763
AJF06803.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.541
AJF06804.1
Baseplate J protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.540
AJF06802.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.539
AJF06801.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.518
AJF06795.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.464
AJF06796.1
Amidoligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.460
AJF06794.1
Glucosamine 6-phosphate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.450
Your Current Organism:
Geoalkalibacter subterraneus
NCBI taxonomy Id: 483547
Other names: DSM 23483, G. subterraneus, Geoalkalibacter subterraneus Greene et al. 2009, JCM 15104, KCTC 5626, strain Red1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.