STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJF06837.1Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (304 aa)    
Predicted Functional Partners:
AJF06836.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.
       0.779
AJF06841.1
DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.717
AJF06845.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.706
AJF06835.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.665
AJF06843.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.658
AJF06829.1
DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.632
AJF06813.1
Phage protein D-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.573
AJF06810.1
Baseplate assembly protein V; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.561
AJF06817.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.525
AJF06852.1
LexA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.523
Your Current Organism:
Geoalkalibacter subterraneus
NCBI taxonomy Id: 483547
Other names: DSM 23483, G. subterraneus, Geoalkalibacter subterraneus Greene et al. 2009, JCM 15104, KCTC 5626, strain Red1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.