STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJF07398.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)    
Predicted Functional Partners:
AJF07898.1
Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.609
AJF07400.1
Phosphoglucomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.553
AJF05812.1
Peptidase U32; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.525
AJF07399.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.505
AJF07397.1
ATP-dependent DNA helicase Rep; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.441
AJF06600.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.427
AJF07718.1
Peptidase U32; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.410
Your Current Organism:
Geoalkalibacter subterraneus
NCBI taxonomy Id: 483547
Other names: DSM 23483, G. subterraneus, Geoalkalibacter subterraneus Greene et al. 2009, JCM 15104, KCTC 5626, strain Red1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.