STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDN41539.1Hypothetical membrane protein; Product derived from UniProtKB/Trembl:A8FDX8. (163 aa)    
Predicted Functional Partners:
yeiL
Regulatory protein YeiL; Product derived from UniProtKB/Swiss-Prot:P0A9E9;Gene name derived from UniProtKB/Swiss-Prot:P0A9E9.
 
     0.935
yfnB
Putative HAD-hydrolase YfnB; Product derived from UniProtKB/Swiss-Prot:O06480;Gene name derived from UniProtKB/Swiss-Prot:O06480;EC number derived from UniProtKB/Swiss-Prot:O06480.
       0.857
recF
Hypothetical protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.
       0.773
pyrE
Orotate phosphoribosyltransferase; Product derived from UniProtKB/Swiss-Prot:Q732I7;Gene name derived from UniProtKB/Swiss-Prot:Q732I7;EC number derived from UniProtKB/Swiss-Prot:Q732I7.
  
    0.688
pyrD
Dihydroorotate dehydrogenase (quinone); Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
    0.687
pyrF
Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
  
    0.687
CDN41536.1
Hypothetical protein.
       0.600
CDN44263.1
Hypothetical protein.
  
     0.599
preA
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA; Product derived from UniProtKB/Swiss-Prot:Q8ZNL7;Gene name derived from UniProtKB/Swiss-Prot:Q8ZNL7;EC number derived from UniProtKB/Swiss-Prot:Q8ZNL7.
  
    0.581
dnaN
DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
       0.572
Your Current Organism:
Paenibacillus sp. P22
NCBI taxonomy Id: 483908
Other names: P. sp. P22
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.