STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDN42067.1Hypothetical protein. (345 aa)    
Predicted Functional Partners:
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.917
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
  0.913
CDN41012.1
Hypothetical protein.
    
  0.863
CDN41013.1
Hypothetical protein.
    
  0.863
CDN42489.1
DEAD2 domain protein; Product derived from UniProtKB/Trembl:F5LPH6.
   
 0.821
dinG
DnaQ family exonuclease/DinG family helicase; 3'-5' exonuclease.
   
 0.821
ypvA
Probable ATP-dependent helicase YpvA; Product derived from UniProtKB/Swiss-Prot:P50831;Gene name derived from UniProtKB/Swiss-Prot:P50831;EC number derived from UniProtKB/Swiss-Prot:P50831.
   
 0.821
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.800
CDN42066.1
Uncharacterized protein; Product derived from UniProtKB/Trembl:R7PEM0.
       0.773
CDN42068.1
Hypothetical protein.
       0.773
Your Current Organism:
Paenibacillus sp. P22
NCBI taxonomy Id: 483908
Other names: P. sp. P22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.