STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDN43212.1Uncharacterized protein; Product derived from UniProtKB/Trembl:L0E7Z2. (190 aa)    
Predicted Functional Partners:
flgL
Flagellar hook-associated protein 3; Product derived from UniProtKB/Swiss-Prot:P96501;Gene name derived from UniProtKB/Swiss-Prot:P96501.
  
  
 0.914
CDN43209.1
FlgN protein; Product derived from UniProtKB/Trembl:L0EB74.
 
  
 0.899
flgK
Flagellar hook-associated protein FlgK; Product derived from UniProtKB/Trembl:L0E9P0.
 
    0.896
flgM
Negative regulator of flagellin synthesis; Product derived from UniProtKB/Swiss-Prot:P39809;Gene name derived from UniProtKB/Swiss-Prot:P39809.
  
    0.860
fliW
Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.
  
    0.802
yvyF
Uncharacterized protein YvyF; Product derived from UniProtKB/Swiss-Prot:P39807;Gene name derived from UniProtKB/Swiss-Prot:P39807.
 
  
 0.781
csrA
Carbon storage regulator homolog; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.
  
    0.707
CDN42470.1
S-layer domain protein; Product derived from UniProtKB/Trembl:E0IEF3.
  
     0.646
CDN45661.1
Uncharacterized protein; Product derived from UniProtKB/Trembl:L0EBX9.
  
     0.641
CDN43338.1
Hypothetical protein.
 
    0.624
Your Current Organism:
Paenibacillus sp. P22
NCBI taxonomy Id: 483908
Other names: P. sp. P22
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