Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TW91_0012VirD4 protein. (461 aa)    
Predicted Functional Partners:
TW91_0013
VirB10 protein.
 
 
 
 0.811
TW91_1441
VirB10 protein.
 
 
 
 0.811
TW91_0018
VirB4 protein.
 
  
 0.786
TW91_1438
VirB4 protein.
 
  
 0.786
TW91_0014
Type IV secretion system protein VirB9.
 
   
 0.784
TW91_1440
Type IV secretion system protein VirB9.
 
   
 0.784
TW91_0015
VirB8 protein.
 
   
 0.783
TW91_1439
VirB8 protein.
 
   
 0.779
TW91_1442
P-type DNA transfer ATPase VirB11.
 
   
 0.738
TW91_0871
Hypothetical protein.
  
     0.704
Your Current Organism:
Neisseria flavescens
NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263
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