TW91_0181 protein (Neisseria flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

TW91_0181

Glutathione S-transferase 1; Belongs to the GST superfamily. (224 aa)

Predicted Functional Partners:

TW91_1574

0.926

Ggt

0.905

gshB

0.900

TW91_0182

0.773

TW91_0183

0.773

TW91_0185

0.726

TW91_0184

0.723

rpoB

0.686

RpoA

0.673

rpoZ

0.664

Your Current Organism:

Neisseria flavescens

NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ggt	TW91_0181	TW91_0690	TW91_0181	Gamma-glutamyltransferase.	Glutathione S-transferase 1; Belongs to the GST superfamily.	0.905
Ggt	TW91_1574	TW91_0690	TW91_1574	Gamma-glutamyltransferase.	Hybrid peroxiredoxin hyPrx5.	0.904
Ggt	gshB	TW91_0690	TW91_1838	Gamma-glutamyltransferase.	Glutathione synthase; Belongs to the prokaryotic GSH synthase family.	0.910
RpoA	TW91_0181	TW91_0044	TW91_0181	DNA-directed RNA polymerase, alpha subunit.	Glutathione S-transferase 1; Belongs to the GST superfamily.	0.673
RpoA	rpoB	TW91_0044	TW91_0775	DNA-directed RNA polymerase, alpha subunit.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
RpoA	rpoZ	TW91_0044	TW91_1888	DNA-directed RNA polymerase, alpha subunit.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.995
TW91_0181	Ggt	TW91_0181	TW91_0690	Glutathione S-transferase 1; Belongs to the GST superfamily.	Gamma-glutamyltransferase.	0.905
TW91_0181	RpoA	TW91_0181	TW91_0044	Glutathione S-transferase 1; Belongs to the GST superfamily.	DNA-directed RNA polymerase, alpha subunit.	0.673
TW91_0181	TW91_0182	TW91_0181	TW91_0182	Glutathione S-transferase 1; Belongs to the GST superfamily.	Hypothetical protein.	0.773
TW91_0181	TW91_0183	TW91_0181	TW91_0183	Glutathione S-transferase 1; Belongs to the GST superfamily.	Hypothetical protein.	0.773
TW91_0181	TW91_0184	TW91_0181	TW91_0184	Glutathione S-transferase 1; Belongs to the GST superfamily.	Protein gtlf3b.	0.723
TW91_0181	TW91_0185	TW91_0181	TW91_0185	Glutathione S-transferase 1; Belongs to the GST superfamily.	Dialkylrecorsinol condensing enzyme.	0.726
TW91_0181	TW91_1574	TW91_0181	TW91_1574	Glutathione S-transferase 1; Belongs to the GST superfamily.	Hybrid peroxiredoxin hyPrx5.	0.926
TW91_0181	gshB	TW91_0181	TW91_1838	Glutathione S-transferase 1; Belongs to the GST superfamily.	Glutathione synthase; Belongs to the prokaryotic GSH synthase family.	0.900
TW91_0181	rpoB	TW91_0181	TW91_0775	Glutathione S-transferase 1; Belongs to the GST superfamily.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.686
TW91_0181	rpoZ	TW91_0181	TW91_1888	Glutathione S-transferase 1; Belongs to the GST superfamily.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.664
TW91_0182	TW91_0181	TW91_0182	TW91_0181	Hypothetical protein.	Glutathione S-transferase 1; Belongs to the GST superfamily.	0.773
TW91_0182	TW91_0183	TW91_0182	TW91_0183	Hypothetical protein.	Hypothetical protein.	0.948
TW91_0182	TW91_0184	TW91_0182	TW91_0184	Hypothetical protein.	Protein gtlf3b.	0.723
TW91_0182	TW91_0185	TW91_0182	TW91_0185	Hypothetical protein.	Dialkylrecorsinol condensing enzyme.	0.940