Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
TW91_0206Twitching motility protein PilU. (366 aa)    
Predicted Functional Partners:
TW91_0973
Pilin biogenesis protein.
 
   
 0.797
TW91_0972
Bacterial Peptidase A24 domain protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
   
 0.791
PilM
PilM protein.
  
  
 0.625
TW91_0397
Fimbrial assembly protein PilQ.
  
  
 0.607
TW91_0205
Type II/IV secretion system protein.
 
  
0.579
TW91_0207
Putative membrane protein.
  
    0.470
TW91_0399
Pilus assembly protein, PilO.
  
  
 0.436
Your Current Organism:
Neisseria flavescens
NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263
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