Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TW91_0336Oligopeptide/dipeptide transporter, C- region family; Belongs to the ABC transporter superfamily. (410 aa)    
Predicted Functional Partners:
OppC
Oligopeptide transport system permease protein OppC.
 
 0.998
OppB
Oligopeptide transport system permease protein OppB.
 
 
 0.989
TW91_0340
Periplasmic oligopeptide-binding protein.
 
 
 0.959
TW91_1420
ABC transporter, permease protein.
 
  
 0.791
TW91_0335
Oligopeptide/dipeptide transporter, C- region family.
 
    
0.786
TW91_1422
ABC transporter, permease protein.
 
  
 0.784
TW91_1421
ABC transporter, permease protein.
 
  
 0.746
TW91_0519
ABC transporter, periplasmic substrate-binding protein.
 
  
 0.405
Your Current Organism:
Neisseria flavescens
NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263
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