STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TW91_0361ABC transporter family protein. (977 aa)    
Predicted Functional Partners:
TW91_0362
Outer membrane efflux protein.
 
     0.772
TW91_1394
Outer membrane efflux protein.
 
     0.718
TW91_1772
Putative membrane protein.
  
 
 0.644
TW91_0283
Hypothetical protein.
  
 
 0.567
TW91_0360
ABC-2 type transporter.
  
 
 0.567
TW91_0011
Putative RTX toxins and related Ca2+-binding protein.
  
     0.553
msbA
Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
0.553
TW91_0739
ATP-binding protein.
 
  
 
0.537
TW91_1965
Hypothetical protein.
 
     0.517
TW91_0636
ABC transporter, ATP-binding protein.
  
0.514
Your Current Organism:
Neisseria flavescens
NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263
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