TW91_0362 protein (Neisseria flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TW91_0362

Outer membrane efflux protein. (420 aa)

Predicted Functional Partners:

TW91_1392

0.886

macB

0.834

TW91_1393

0.773

TW91_0361

0.772

TW91_0559

0.568

TW91_0011

0.456

TW91_1965

0.418

TW91_0843

0.408

Your Current Organism:

Neisseria flavescens

NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TW91_0011	TW91_0361	TW91_0011	TW91_0361	Putative RTX toxins and related Ca2+-binding protein.	ABC transporter family protein.	0.553
TW91_0011	TW91_0362	TW91_0011	TW91_0362	Putative RTX toxins and related Ca2+-binding protein.	Outer membrane efflux protein.	0.456
TW91_0011	TW91_0843	TW91_0011	TW91_0843	Putative RTX toxins and related Ca2+-binding protein.	Bifunctional hemolysin/adenylate cyclase.	0.774
TW91_0011	TW91_1392	TW91_0011	TW91_1392	Putative RTX toxins and related Ca2+-binding protein.	Type I secretion membrane fusion protein.	0.661
TW91_0011	TW91_1393	TW91_0011	TW91_1393	Putative RTX toxins and related Ca2+-binding protein.	ABC transporter family protein.	0.567
TW91_0011	TW91_1965	TW91_0011	TW91_1965	Putative RTX toxins and related Ca2+-binding protein.	Hypothetical protein.	0.459
TW91_0361	TW91_0011	TW91_0361	TW91_0011	ABC transporter family protein.	Putative RTX toxins and related Ca2+-binding protein.	0.553
TW91_0361	TW91_0362	TW91_0361	TW91_0362	ABC transporter family protein.	Outer membrane efflux protein.	0.772
TW91_0361	TW91_0843	TW91_0361	TW91_0843	ABC transporter family protein.	Bifunctional hemolysin/adenylate cyclase.	0.513
TW91_0361	TW91_1965	TW91_0361	TW91_1965	ABC transporter family protein.	Hypothetical protein.	0.517
TW91_0362	TW91_0011	TW91_0362	TW91_0011	Outer membrane efflux protein.	Putative RTX toxins and related Ca2+-binding protein.	0.456
TW91_0362	TW91_0361	TW91_0362	TW91_0361	Outer membrane efflux protein.	ABC transporter family protein.	0.772
TW91_0362	TW91_0559	TW91_0362	TW91_0559	Outer membrane efflux protein.	Multidrug resistance protein A.	0.568
TW91_0362	TW91_0843	TW91_0362	TW91_0843	Outer membrane efflux protein.	Bifunctional hemolysin/adenylate cyclase.	0.408
TW91_0362	TW91_1392	TW91_0362	TW91_1392	Outer membrane efflux protein.	Type I secretion membrane fusion protein.	0.886
TW91_0362	TW91_1393	TW91_0362	TW91_1393	Outer membrane efflux protein.	ABC transporter family protein.	0.773
TW91_0362	TW91_1965	TW91_0362	TW91_1965	Outer membrane efflux protein.	Hypothetical protein.	0.418
TW91_0362	macB	TW91_0362	TW91_1791	Outer membrane efflux protein.	Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.	0.834
TW91_0559	TW91_0362	TW91_0559	TW91_0362	Multidrug resistance protein A.	Outer membrane efflux protein.	0.568
TW91_0559	macB	TW91_0559	TW91_1791	Multidrug resistance protein A.	Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.	0.924