Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TW91_0378Antigenic protein. (284 aa)    
Predicted Functional Partners:
TW91_0381
ArtM protein.
 
 
 0.945
TW91_0380
Polar amino acid ABC transporter, inner membrane subunit.
 
 
 0.921
TW91_0379
Glutamine transport ATP-binding protein GlnQ.
 
 
 0.906
TW91_1782
Binding-protein-dependent transport system inner membrane protein.
 
 
 0.743
TW91_1585
Glutamine transport ATP-binding protein GlnQ.
 
 
 0.719
TW91_0740
L-cystine transport system permease protein TcyB.
 
 
 0.704
TW91_0739
ATP-binding protein.
 
 
 0.697
argA
Amino-acid N-acetyltransferase; Belongs to the acetyltransferase family. ArgA subfamily.
  
  
 0.467
TW91_0377
Tat pathway signal sequence domain protein.
       0.436
PheA
P-protein.
      
 0.432
Your Current Organism:
Neisseria flavescens
NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263
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