Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
TW91_0389D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase. (470 aa)    
Predicted Functional Partners:
TW91_0390
Lincomycin resistance protein LmrB.
       0.574
TW91_1959
Muramoyltetrapeptide carboxypeptidase.
 
   
 0.495
TW91_2021
Hypothetical protein.
  
    0.467
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
  
   
 0.454
TW91_0759
D-alanyl-D-alanine carboxypeptidase DacC; Belongs to the peptidase S11 family.
      
 0.434
TW91_0393
DNA-binding response regulator.
  
  
 0.423
TW91_0394
Sensor histidine kinase.
  
  
 0.409
TW91_0392
Flavin reductase.
       0.406
Your Current Organism:
Neisseria flavescens
NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263
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