Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TW91_0540Secreted protein. (145 aa)    
Predicted Functional Partners:
CcoN
Cytochrome c oxidase, Cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.849
TW91_1318
Periplasmic protein.
  
     0.774
TW91_0541
Mutator MutT.
       0.773
TW91_1710
Hypothetical protein.
  
     0.773
LptC
Hypothetical protein.
  
     0.768
TW91_0792
Hypothetical protein.
  
     0.760
TW91_1396
Hypothetical protein.
  
     0.756
TW91_0374
Inner membrane protein.
  
     0.755
TW91_1639
Hypothetical protein.
  
     0.753
TW91_1507
Chorismate--pyruvate lyase.
  
     0.749
Your Current Organism:
Neisseria flavescens
NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263
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