STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WaaCLipopolysaccharide heptosyltransferase I. (240 aa)    
Predicted Functional Partners:
WaaF
Lipopolysaccharide heptosyltransferase II.
 
 0.995
TW91_0683
Lipopolysaccharide heptosyltransferase I.
     0.985
RfaQ
Putative lipopolysaccharide heptosyltransferase III.
  
  
 0.971
TW91_0596
Kdo transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
  
 0.940
TW91_1435
Bifunctional protein RfaE, domain I.
 
  
 0.676
TW91_0685
Nicotinamidase.
       0.625
TW91_0499
Bifunctional protein RfaE, domain II.
 
  
 0.564
FabG
3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
  0.558
FabG-2
Putative 3-oxoacyl-(acyl-carrier-protein) reductase.
    
  0.558
TW91_1365
Iron-sulfur binding protein.
   
  0.542
Your Current Organism:
Neisseria flavescens
NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263
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