TW91_0709 protein (Neisseria flavescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TW91_0709

Factor H-binding protein. (266 aa)

Predicted Functional Partners:

NadA

0.927

TW91_0011

0.520

TW91_0843

0.520

TW91_1499

0.520

TW91_1927

0.520

TW91_0708

0.509

TW91_0397

0.430

TW91_1069

0.424

TW91_1539

0.424

TW91_1727

0.424

Your Current Organism:

Neisseria flavescens

NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NadA	TW91_0397	TW91_0055	TW91_0397	Quinolinate synthetase complex, A subunit.	Fimbrial assembly protein PilQ.	0.766
NadA	TW91_0709	TW91_0055	TW91_0709	Quinolinate synthetase complex, A subunit.	Factor H-binding protein.	0.927
TW91_0011	TW91_0709	TW91_0011	TW91_0709	Putative RTX toxins and related Ca2+-binding protein.	Factor H-binding protein.	0.520
TW91_0011	TW91_0843	TW91_0011	TW91_0843	Putative RTX toxins and related Ca2+-binding protein.	Bifunctional hemolysin/adenylate cyclase.	0.774
TW91_0397	NadA	TW91_0397	TW91_0055	Fimbrial assembly protein PilQ.	Quinolinate synthetase complex, A subunit.	0.766
TW91_0397	TW91_0709	TW91_0397	TW91_0709	Fimbrial assembly protein PilQ.	Factor H-binding protein.	0.430
TW91_0708	TW91_0709	TW91_0708	TW91_0709	Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.	Factor H-binding protein.	0.509
TW91_0709	NadA	TW91_0709	TW91_0055	Factor H-binding protein.	Quinolinate synthetase complex, A subunit.	0.927
TW91_0709	TW91_0011	TW91_0709	TW91_0011	Factor H-binding protein.	Putative RTX toxins and related Ca2+-binding protein.	0.520
TW91_0709	TW91_0397	TW91_0709	TW91_0397	Factor H-binding protein.	Fimbrial assembly protein PilQ.	0.430
TW91_0709	TW91_0708	TW91_0709	TW91_0708	Factor H-binding protein.	Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.	0.509
TW91_0709	TW91_0843	TW91_0709	TW91_0843	Factor H-binding protein.	Bifunctional hemolysin/adenylate cyclase.	0.520
TW91_0709	TW91_1069	TW91_0709	TW91_1069	Factor H-binding protein.	Surface antigen family protein.	0.424
TW91_0709	TW91_1499	TW91_0709	TW91_1499	Factor H-binding protein.	Bifunctional hemolysin/adenylate cyclase.	0.520
TW91_0709	TW91_1539	TW91_0709	TW91_1539	Factor H-binding protein.	Inner membrane lipoprotein YiaD.	0.424
TW91_0709	TW91_1727	TW91_0709	TW91_1727	Factor H-binding protein.	Outer membrane Protein p.iii.	0.424
TW91_0709	TW91_1927	TW91_0709	TW91_1927	Factor H-binding protein.	Putative RTX toxin exported protein.	0.520
TW91_0843	TW91_0011	TW91_0843	TW91_0011	Bifunctional hemolysin/adenylate cyclase.	Putative RTX toxins and related Ca2+-binding protein.	0.774
TW91_0843	TW91_0709	TW91_0843	TW91_0709	Bifunctional hemolysin/adenylate cyclase.	Factor H-binding protein.	0.520
TW91_1069	TW91_0709	TW91_1069	TW91_0709	Surface antigen family protein.	Factor H-binding protein.	0.424