STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TW91_0898Squalene-associated FAD-dependent desaturase. (426 aa)    
Predicted Functional Partners:
HpnD
Squalene synthase HpnD.
    0.963
HpnC
Squalene synthase HpnC.
 
    0.796
TW91_0899
Short chain dehydrogenase.
     
 0.739
TW91_1715
Hemerythrin HHE cation binding domain protein.
  
     0.675
TW91_0239
Hypothetical protein.
  
     0.591
TW91_1403
RNA polymerase factor sigma-32.
  
     0.499
TW91_1451
Inner membrane protein.
  
     0.480
TW91_0683
Lipopolysaccharide heptosyltransferase I.
  
     0.446
TW91_1949
Putative membrane protein.
  
     0.437
TW91_1258
Putative membrane protein.
  
     0.425
Your Current Organism:
Neisseria flavescens
NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.