Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TW91_0904ABC transporter ATPase TroB. (251 aa)    
Predicted Functional Partners:
TW91_0905
Putative membrane protein.
 
 
 0.998
TW91_0906
Periplasmic binding protein MntC; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.994
TW91_0443
Hypothetical protein.
  
 
 0.955
TW91_1418
Cation uptake regulator; Belongs to the Fur family.
  
  
 0.645
TW91_0903
Hypothetical protein.
       0.462
fur
Ferric uptake regulation protein; Belongs to the Fur family.
  
  
 0.423
Your Current Organism:
Neisseria flavescens
NCBI taxonomy Id: 484
Other names: ATCC 13120, CCUG 17913, CCUG 345, CIP 73.15, DSM 17633, LMG 5297, LMG:5297, NCTC 8263
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