Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| RaiA | RpoN | TW91_0992 | TW91_0990 | Ribosomal subunit interface protein. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.730 |
| RaiA | TW91_0991 | TW91_0992 | TW91_0991 | Ribosomal subunit interface protein. | RNA polymerase sigma-54 factor. | 0.730 |
| RpoA | RpoN | TW91_0044 | TW91_0990 | DNA-directed RNA polymerase, alpha subunit. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.734 |
| RpoA | TW91_0773 | TW91_0044 | TW91_0773 | DNA-directed RNA polymerase, alpha subunit. | DNA-directed RNA polymerase, beta' subunit. | 0.985 |
| RpoA | TW91_0991 | TW91_0044 | TW91_0991 | DNA-directed RNA polymerase, alpha subunit. | RNA polymerase sigma-54 factor. | 0.734 |
| RpoA | rpoB | TW91_0044 | TW91_0775 | DNA-directed RNA polymerase, alpha subunit. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| RpoA | rpoC | TW91_0044 | TW91_0772 | DNA-directed RNA polymerase, alpha subunit. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.989 |
| RpoA | rpoZ | TW91_0044 | TW91_1888 | DNA-directed RNA polymerase, alpha subunit. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.999 |
| RpoN | RaiA | TW91_0990 | TW91_0992 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Ribosomal subunit interface protein. | 0.730 |
| RpoN | RpoA | TW91_0990 | TW91_0044 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, alpha subunit. | 0.734 |
| RpoN | TW91_0773 | TW91_0990 | TW91_0773 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, beta' subunit. | 0.548 |
| RpoN | TW91_0991 | TW91_0990 | TW91_0991 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | RNA polymerase sigma-54 factor. | 0.994 |
| RpoN | TW91_0998 | TW91_0990 | TW91_0998 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Two component sensor kinase. | 0.907 |
| RpoN | TW91_0999 | TW91_0990 | TW91_0999 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Type 4 fimbriae expression regulatory protein PilR. | 0.777 |
| RpoN | rpoB | TW91_0990 | TW91_0775 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.730 |
| RpoN | rpoC | TW91_0990 | TW91_0772 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.548 |
| RpoN | rpoZ | TW91_0990 | TW91_1888 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.689 |
| RpoN | rsmJ | TW91_0990 | TW91_1000 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Hypothetical protein; Specifically methylates the guanosine in position 1516 of 16S rRNA. | 0.548 |
| TW91_0773 | RpoA | TW91_0773 | TW91_0044 | DNA-directed RNA polymerase, beta' subunit. | DNA-directed RNA polymerase, alpha subunit. | 0.985 |
| TW91_0773 | RpoN | TW91_0773 | TW91_0990 | DNA-directed RNA polymerase, beta' subunit. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.548 |
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